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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8849053_8849859_F

Intron Information:

Intron Rank:
124431
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
8849053 - 8849859
Intron Length:
807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATGTTCT
5'SS Class:
weak_major
3'SS Sequence:
CACTGCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTTTGCTACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
68.2
37.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
70
0.45
1
62.1
38.2
Minor 5ss
54
0.14
2.3
73.4
36.6
Minor BPS
44.8
-0.4
2.4
65.95
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017080
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036368
8848826 - 8851711
2886