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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88508304_88519106_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
88508304 - 88519106
Intron Length:
10803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTATTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTTTTTTATTA
Flanking Amino Acid:
VSVWERELRKAKPNRKLTFL
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
83.9
0.76
0.8
85.7
27.3
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
61.6
0.36
1.5
69.82
37.7

Associated Gene:

Gene:
RPRD1A
Ensembl Gene ID:
ENSAPLG00000006646
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006916
88508153 - 88546772
38620