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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88508304_88519944_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88508304 - 88519944
Intron Length:
11641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTGTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCCTTGTAACA
Flanking Amino Acid:
RQRVGAGAAQSESDESCKKH
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
76.2
0.59
0.9
72.5
36.4
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
52.1
0.06
2
67.58
39.4

Associated Gene:

Gene:
RPRD1A
Ensembl Gene ID:
ENSAPLG00000006646
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024107
88506966 - 88523210
16245
ENSAPLT00000023992
88506966 - 88521891
14926
ENSAPLT00000018666
88506966 - 88546772
39807
ENSAPLT00000036384
88506966 - 88523434
16469