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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88520052_88520133_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
88520052 - 88520133
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TGTTTTCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGTTTTCATT
Flanking Amino Acid:
DVLEQLRQALYGDRKVRKRT
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
83.8
34.5
Major BPS
100
1.24
0.5
100
0
Major PPT
79.4
0.66
0.9
78.6
35
Minor 5ss
43.7
-0.7
2.9
61.3
43
Minor BPS
56.6
0.29
1.8
78.3
39.3

Associated Gene:

Gene:
RPRD1A
Ensembl Gene ID:
ENSAPLG00000006646
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023992
88506966 - 88521891
14926
ENSAPLT00000018666
88506966 - 88546772
39807
ENSAPLT00000006916
88508153 - 88546772
38620
ENSAPLT00000036384
88506966 - 88523434
16469
ENSAPLT00000024107
88506966 - 88523210
16245