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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88520229_88521216_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88520229 - 88521216
Intron Length:
988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
ATGCTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTACTTAAACT
Flanking Amino Acid:
PRSSPTDPPQTTDLIRALQE
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
83.3
0.75
0.8
81
36
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
70.6
0.73
1.7
88.46
36.7

Associated Gene:

Gene:
RPRD1A
Ensembl Gene ID:
ENSAPLG00000006646
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018666
88506966 - 88546772
39807
ENSAPLT00000006916
88508153 - 88546772
38620
ENSAPLT00000036384
88506966 - 88523434
16469
ENSAPLT00000024107
88506966 - 88523210
16245
ENSAPLT00000023992
88506966 - 88521891
14926