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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88521344_88521441_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
88521344 - 88521441
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTGCTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
CATGCTTTACCT
Flanking Amino Acid:
QDVSLLDRITDKESGEQLSK
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
82
31
Major BPS
71.6
0.54
1
72
33.1
Major PPT
76.4
0.59
0.9
73.3
37.2
Minor 5ss
29.7
-2.3
3.7
45.9
49.3
Minor BPS
57.3
0.31
1.8
72.26
45

Associated Gene:

Gene:
RPRD1A
Ensembl Gene ID:
ENSAPLG00000006646
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018666
88506966 - 88546772
39807
ENSAPLT00000006916
88508153 - 88546772
38620
ENSAPLT00000036384
88506966 - 88523434
16469
ENSAPLT00000024107
88506966 - 88523210
16245
ENSAPLT00000023992
88506966 - 88521891
14926