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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88521618_88521858_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88521618 - 88521858
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGCGTAAT
5'SS Class:
major
3'SS Sequence:
TTTTGTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
ACTTCAATCACT
Flanking Amino Acid:
FLAEKEHKLEDVWSAQYVKA
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
77
33.3
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
82.6
0.73
0.9
81.2
36.5
Minor 5ss
32.6
-2
3
41.8
39.2
Minor BPS
47.9
-0
2.3
72.6
43.9

Associated Gene:

Gene:
RPRD1A
Ensembl Gene ID:
ENSAPLG00000006646
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023992
88506966 - 88521891
14926