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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88521618_88522817_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
88521618 - 88522817
Intron Length:
1200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGCGTAAT
5'SS Class:
major
3'SS Sequence:
ATCCTCACCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCCTCACCC
Flanking Amino Acid:
FLAEKEHKLEGEEYQPTSHK
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
77
33.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
57
0.16
1
53.9
34.9
Minor 5ss
32.6
-2
3
41.8
39.2
Minor BPS
62.8
0.38
1.9
75.78
40.4

Associated Gene:

Gene:
RPRD1A
Ensembl Gene ID:
ENSAPLG00000006646
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024107
88506966 - 88523210
16245