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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88552080_88555200_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88552080 - 88555200
Intron Length:
3121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTCCGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATTTCTTTATTC
Flanking Amino Acid:
KKYRDSKSVLLITCTSCNKT
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
69.6
41.1
Major BPS
80
0.75
1
78.6
31
Major PPT
75
0.56
0.8
70.4
29.8
Minor 5ss
33
-1.9
3.7
43.3
45.4
Minor BPS
68.6
0.56
1.5
76.34
34.2

Associated Gene:

Gene:
C18orf21
Ensembl Gene ID:
ENSAPLG00000006845
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025458
88551210 - 88556243
5034
ENSAPLT00000007095
88551210 - 88555875
4666