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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88555401_88555643_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
88555401 - 88555643
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTAACCCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTCTGTTAACC
Flanking Amino Acid:
FLLWTLGRRRDDEFGKERIC
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
74.2
39.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
66.4
0.37
0.9
59.9
36.7
Minor 5ss
16.3
-3.9
3.5
21.4
38
Minor BPS
58
0.23
2.1
71.01
40.5

Associated Gene:

Gene:
C18orf21
Ensembl Gene ID:
ENSAPLG00000006845
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007095
88551210 - 88555875
4666