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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8873127_8882495_R

Intron Information:

Intron Rank:
142062
Intron Class:
major
Intron Phase:
Intron Coordinates:
8873127 - 8882495
Intron Length:
9369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCCTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68
42.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.5
0.82
0.6
85.2
22.1
Minor 5ss
40.6
-1
2.7
50.7
45.7
Minor BPS
57.4
0.31
1.6
70.13
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047767
8872997 - 8882817
9821