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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88808121_88808852_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88808121 - 88808852
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTCTCAATT
Flanking Amino Acid:
FNCHGMGGNQVFSYTANKEI
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1.1
83.9
30.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
79.5
0.66
0.8
73.6
37
Minor 5ss
46.2
-0.4
2.8
66.9
44.4
Minor BPS
76.7
0.92
1.4
91.82
31

Associated Gene:

Gene:
GALNT1
Ensembl Gene ID:
ENSAPLG00000009730
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042120
88805150 - 88863878
58729
ENSAPLT00000010189
88805615 - 88885411
79797