Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88819098_88820565_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

88819098 - 88820565

Intron Length:

1468

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAATGATT

5'SS Class:

strong_major

3'SS Sequence:

GTCTTTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TATTTTTTATTT

Flanking Amino Acid:

RRKGDRTLPVRTPTMAGGLF

Intron Amino Acid Position:

287

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

84.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

86.8

0.83

0.7

84.6

30.4

Minor 5ss

38.3

-1.3

3.4

57.5

46.8

Minor BPS

65.4

0.56

1.5

80.16

36.3

Associated Gene:

Gene:

GALNT1

Ensembl Gene ID:

ENSAPLG00000009730

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042120

88805150 - 88863878

58729

ENSAPLT00000010189

88805615 - 88885411

79797