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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88820737_88822326_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88820737 - 88822326
Intron Length:
1590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTTGAATTAATA
Flanking Amino Acid:
EPLLARIKADRRTVVCPIID
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
87.2
27.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
83.6
0.76
0.7
76.9
31.8
Minor 5ss
40.4
-1.1
2.8
54.5
42.7
Minor BPS
50.6
0.02
1.9
65.2
41.5

Associated Gene:

Gene:
GALNT1
Ensembl Gene ID:
ENSAPLG00000009730
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010189
88805615 - 88885411
79797
ENSAPLT00000042120
88805150 - 88863878
58729