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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8884924_8894422_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8884924 - 8894422
Intron Length:
9499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGGAT
U12 Branch Point Sequence:
GTAATAGTATCT
Flanking Amino Acid:
KVSLGGASRKEEKASLLHRT
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
71.4
0.53
1.4
71.4
45.1
Major PPT
84.9
0.78
0.8
77.7
36.7
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
40.2
-0.6
2.3
59.28
43.5

Associated Gene:

Gene:
UBE3C
Ensembl Gene ID:
ENSAPLG00000005692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006021
8884858 - 8958906
74049