About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88863879_88885327_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
88863879 - 88885327
Intron Length:
21449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
CTTATCTGAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81
26.6
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
83.1
0.75
0.7
81.5
30.6
Minor 5ss
36
-1.6
2.8
44.6
43.4
Minor BPS
62.7
0.48
1.5
77.05
39.7

Associated Gene:

Gene:
GALNT1
Ensembl Gene ID:
ENSAPLG00000009730
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010189
88805615 - 88885411
79797