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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88926865_88928624_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
88926865 - 88928624
Intron Length:
1760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGCTGC
5'SS Class:
weak_major
3'SS Sequence:
TGTTTCTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
GCACACTGAACG
Flanking Amino Acid:
ALPWQLNDPSYFSIDAPPSF
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
57.4
42.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
81.7
0.71
0.8
74.4
36.5
Minor 5ss
47.1
-0.3
2.9
68.8
42
Minor BPS
47.4
-0.3
1.7
49.09
43.5

Associated Gene:

Gene:
INO80C
Ensembl Gene ID:
ENSAPLG00000023404
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033808
88922515 - 88933607
11093