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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88928693_88933475_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88928693 - 88933475
Intron Length:
4783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
GTTTCTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TTTTCTTTGAAT
Flanking Amino Acid:
KKYSDISGLPANYTDPQSKL
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
84.1
0.77
0.8
76.7
37.4
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
78
0.96
1.3
92.24
29.8

Associated Gene:

Gene:
INO80C
Ensembl Gene ID:
ENSAPLG00000023404
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033808
88922515 - 88933607
11093