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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8894477_8897040_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8894477 - 8897040
Intron Length:
2564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTAG
5'SS Class:
major
3'SS Sequence:
TTCCTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTTATTTATTC
Flanking Amino Acid:
RTQEERRKREEERRRLKNAI
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69
38.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
92.3
0.95
0.6
91.5
19.8
Minor 5ss
35.4
-1.7
3.3
45.9
49.3
Minor BPS
56.7
0.19
1.7
69.43
36.3

Associated Gene:

Gene:
UBE3C
Ensembl Gene ID:
ENSAPLG00000005692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006021
8884858 - 8958906
74049