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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8897939_8898808_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8897939 - 8898808
Intron Length:
870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TTAGTTGTAACA
Flanking Amino Acid:
YRQNEDSKRLIWMCQNLIKQ
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
83.8
0.76
0.8
76.7
37
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
50.1
-0
2.1
66.93
40.2

Associated Gene:

Gene:
UBE3C
Ensembl Gene ID:
ENSAPLG00000005692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006021
8884858 - 8958906
74049