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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_88984752_88999321_R

Intron Information:

Intron Rank:
150239
Intron Class:
major
Intron Phase:
Intron Coordinates:
88984752 - 88999321
Intron Length:
14570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTTCTTTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
83.2
30.8
Major BPS
73.9
0.59
1
81
30.2
Major PPT
87.8
0.85
0.6
83.8
24.5
Minor 5ss
33.6
-1.9
3
41.3
45.3
Minor BPS
49
-0
1.9
68.33
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028417
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025715
88980235 - 88999766
19532