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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8898925_8900206_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8898925 - 8900206
Intron Length:
1282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCATTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTCATA
Flanking Amino Acid:
QIKRLLGLCCRLLQNCNDDS
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.4
0.57
0.8
70
34.9
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
58.4
0.26
2
74.94
36.6

Associated Gene:

Gene:
UBE3C
Ensembl Gene ID:
ENSAPLG00000005692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006021
8884858 - 8958906
74049