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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8902492_8903108_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8902492 - 8903108
Intron Length:
617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTCTTCATTT
Flanking Amino Acid:
FTYSSCPEGARQQIFAAFTE
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.4
1.09
0.7
87
30
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
83.3
0.75
0.7
82.1
28.2
Minor 5ss
35.1
-1.7
2.7
41.5
45.1
Minor BPS
62.8
0.48
1.8
83.89
37.6

Associated Gene:

Gene:
UBE3C
Ensembl Gene ID:
ENSAPLG00000005692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006021
8884858 - 8958906
74049