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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8903330_8903602_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8903330 - 8903602
Intron Length:
273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGAAAG
5'SS Class:
major
3'SS Sequence:
ATATTCGGTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTCAATA
Flanking Amino Acid:
FVLTVGETYLGSLSEEGLLV
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
67.7
39.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
64
0.32
1.1
58.3
42.4
Minor 5ss
26.9
-2.6
2.7
23.2
36.9
Minor BPS
60.1
0.31
1.5
71.64
34.7

Associated Gene:

Gene:
UBE3C
Ensembl Gene ID:
ENSAPLG00000005692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006021
8884858 - 8958906
74049