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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8905557_8912902_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8905557 - 8912902
Intron Length:
7346

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTATTTGAACT
Flanking Amino Acid:
VQHRMMVPKVRLLYSLAFNA
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.3
1.16
0.7
93.2
21.3
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
86.8
0.83
0.7
84.4
23.4
Minor 5ss
29
-2.4
3.8
41.8
44.8
Minor BPS
68.4
0.66
1.4
85.2
34.8

Associated Gene:

Gene:
UBE3C
Ensembl Gene ID:
ENSAPLG00000005692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006021
8884858 - 8958906
74049