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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89193916_89200800_R

Intron Information:

Intron Rank:
140998
Intron Class:
major
Intron Phase:
Intron Coordinates:
89193916 - 89200800
Intron Length:
6885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTATCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTATGTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.5
0.69
0.9
73.8
36.7
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
48.1
-0.1
2.3
70.85
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023181
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023869
89193040 - 89201646
8607