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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89223450_89243693_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
89223450 - 89243693
Intron Length:
20244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTGATTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
GTTTCTTTGATT
Flanking Amino Acid:
IVGQSVEEAIRGVFDASLKM
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.9
36.3
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
75.5
0.57
1
73.6
41.7
Minor 5ss
46.6
-0.3
2.5
61.6
43.3
Minor BPS
77.8
0.96
1
87.51
31.6

Associated Gene:

Gene:
TMEM245
Ensembl Gene ID:
ENSAPLG00000009827
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044113
89217496 - 89296298
78803
ENSAPLT00000040284
89217197 - 89296298
79102
ENSAPLT00000010238
89217496 - 89296298
78803