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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89249376_89255882_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
89249376 - 89255882
Intron Length:
6507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTGTCTTCATT
Flanking Amino Acid:
VHDNIETFLSILESLWIVMS
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
83.9
34.2
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
85.7
0.8
0.7
83.4
24.8
Minor 5ss
48.2
-0.2
2.5
69.3
41.2
Minor BPS
62.5
0.47
1.8
82.74
39.5

Associated Gene:

Gene:
TMEM245
Ensembl Gene ID:
ENSAPLG00000009827
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044113
89217496 - 89296298
78803
ENSAPLT00000040284
89217197 - 89296298
79102
ENSAPLT00000010238
89217496 - 89296298
78803