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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89256015_89259504_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
89256015 - 89259504
Intron Length:
3490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
CTATCCTTACAT
Flanking Amino Acid:
DRLYHSWFVKNVTHSGRHKG
Intron Amino Acid Position:
588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
77.5
32.9
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
85.8
0.8
0.9
91.3
21
Minor 5ss
29.2
-2.4
2.9
35.3
41.5
Minor BPS
63
0.49
1.8
78.07
43.9

Associated Gene:

Gene:
TMEM245
Ensembl Gene ID:
ENSAPLG00000009827
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044113
89217496 - 89296298
78803
ENSAPLT00000040284
89217197 - 89296298
79102
ENSAPLT00000010238
89217496 - 89296298
78803