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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89259604_89260363_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
89259604 - 89260363
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
CTGTATGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
ATTTCTGTATGT
Flanking Amino Acid:
QYGREWITHKLHKILGEKVN
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
76.3
0.59
1
72.8
41.9
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
47
-0.1
2.4
73.56
43.9

Associated Gene:

Gene:
TMEM245
Ensembl Gene ID:
ENSAPLG00000009827
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044113
89217496 - 89296298
78803
ENSAPLT00000040284
89217197 - 89296298
79102
ENSAPLT00000010238
89217496 - 89296298
78803