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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89260455_89262500_R

Intron Information:

Intron Rank:
10
Intron Class:
major_hybrid
Intron Phase:
2
Intron Coordinates:
89260455 - 89262500
Intron Length:
2046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
AAAAACAAAACAG|C
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTCTTCTTAAAA
Flanking Amino Acid:
ETVASHPEWANWLPEAQVIQ
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
78.3
36.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
47.3
-0.1
1.1
34.6
38.6
Minor 5ss
38.8
-1.3
3.1
50
40.3
Minor BPS
75.3
0.79
1.3
80.08
35.8

Associated Gene:

Gene:
TMEM245
Ensembl Gene ID:
ENSAPLG00000009827
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044113
89217496 - 89296298
78803
ENSAPLT00000040284
89217197 - 89296298
79102
ENSAPLT00000010238
89217496 - 89296298
78803