About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89262584_89263794_R


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
89262584 - 89263794

Intron Length:
1211

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTACAGTGC

5'SS Class:
major

3'SS Sequence:
GTATTTAATTTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
ATTTAAT

U12 Branch Point Sequence:
CTGTATTTAATT

Flanking Amino Acid:
LLLALLLTAKVHQESVHMIQ

Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
69.6
0.46
1.1
58.3
41.8

Major BPS
90.7
1.01
0.7
90
19.9

Major PPT
69.6
0.44
1
67.9
42.4

Minor 5ss
35.4
-1.7
3.5
50.3
46.3

Minor BPS
65
0.55
1.5
76.19
41.2

Associated Gene:

Gene:
TMEM245

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

89217496 - 89296298
78803

89217197 - 89296298
79102