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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89262584_89274433_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
89262584 - 89274433
Intron Length:
11850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCCTA
5'SS Class:
major
3'SS Sequence:
GTATTTAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTGTATTTAATT
Flanking Amino Acid:
GRVMLKLDSKVHQESVHMIQ
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
63.5
42.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
69.6
0.44
1
67.9
42.4
Minor 5ss
47.6
-0.2
2.8
65.3
45.9
Minor BPS
65
0.55
1.5
76.19
41.2

Associated Gene:

Gene:
TMEM245
Ensembl Gene ID:
ENSAPLG00000009827
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044113
89217496 - 89296298
78803