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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89263900_89270181_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
89263900 - 89270181
Intron Length:
6282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTGCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCATGAT
U12 Branch Point Sequence:
TTTTTCTGCACA
Flanking Amino Acid:
SKLWHWLNKKMIVWLEKMLD
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
59.7
0.24
1.2
51.3
42.7
Major PPT
83.5
0.75
0.8
80
32.1
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
62.4
0.38
1.9
79.77
36.3

Associated Gene:

Gene:
TMEM245
Ensembl Gene ID:
ENSAPLG00000009827
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010238
89217496 - 89296298
78803