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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89274604_89279112_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
89274604 - 89279112
Intron Length:
4509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTAATC
5'SS Class:
major
3'SS Sequence:
CTTGTGGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TAATGCTTGATT
Flanking Amino Acid:
IVQLLPVPFAVWALKKLVVH
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
71.8
38.2
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
75.5
0.57
1
68.6
42
Minor 5ss
36.7
-1.5
3.3
51.9
44.9
Minor BPS
61.7
0.45
1.8
76.56
40.3

Associated Gene:

Gene:
TMEM245
Ensembl Gene ID:
ENSAPLG00000009827
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040284
89217197 - 89296298
79102
ENSAPLT00000010238
89217496 - 89296298
78803
ENSAPLT00000044113
89217496 - 89296298
78803