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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89284506_89285109_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
89284506 - 89285109
Intron Length:
604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTTTCTTTATTT
Flanking Amino Acid:
HEQQNGKESSGAELPGQMIS
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
80.4
33.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
92.8
0.96
0.7
88.1
28.6
Minor 5ss
34.1
-1.8
3.3
45.4
43.9
Minor BPS
69.3
0.68
1.6
83.14
39

Associated Gene:

Gene:
TMEM245
Ensembl Gene ID:
ENSAPLG00000009827
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044113
89217496 - 89296298
78803
ENSAPLT00000040284
89217197 - 89296298
79102
ENSAPLT00000010238
89217496 - 89296298
78803