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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89285212_89286467_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
89285212 - 89286467
Intron Length:
1256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CCATCTCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTATTTAATA
Flanking Amino Acid:
PVWIMLLFHLASVAGSWRIP
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.6
22.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.7
0.67
0.8
76.7
31.7
Minor 5ss
30.6
-2.2
2.6
35.8
41.1
Minor BPS
76.1
0.82
1.3
84.11
29.4

Associated Gene:

Gene:
TMEM245
Ensembl Gene ID:
ENSAPLG00000009827
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010238
89217496 - 89296298
78803
ENSAPLT00000044113
89217496 - 89296298
78803
ENSAPLT00000040284
89217197 - 89296298
79102