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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89286586_89295734_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
89286586 - 89295734
Intron Length:
9149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
CTTTCTCTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCTCTTAAAG
Flanking Amino Acid:
QGLDYFSSQWIWTLVLGYLL
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
60.4
45.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.8
0.62
1
78.4
27.7
Minor 5ss
25.8
-2.8
2.9
22.4
37.3
Minor BPS
70.4
0.5
1.4
74.05
37.7

Associated Gene:

Gene:
TMEM245
Ensembl Gene ID:
ENSAPLG00000009827
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010238
89217496 - 89296298
78803
ENSAPLT00000044113
89217496 - 89296298
78803
ENSAPLT00000040284
89217197 - 89296298
79102