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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89309613_89312788_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
89309613 - 89312788
Intron Length:
3176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTACCATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTACCTAAAT
Flanking Amino Acid:
AVGFSSDKKMGGDDVMACVH
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.6
38.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
76.1
0.59
0.9
71.4
34.4
Minor 5ss
36.7
-1.5
3.2
48.7
41.4
Minor BPS
56.2
0.27
2
79.35
42

Associated Gene:

Gene:
FRRS1L
Ensembl Gene ID:
ENSAPLG00000009915
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010321
89308734 - 89315223
6490