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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89312928_89313390_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
89312928 - 89313390
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTCTG
5'SS Class:
major
3'SS Sequence:
CCACTCCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TTACATGCAATT
Flanking Amino Acid:
DDCGKTKGCFRYGKPGCNAE
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
72.7
44.5
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
69.4
0.44
0.8
66.2
29.8
Minor 5ss
33.2
-1.9
2.9
41.4
45
Minor BPS
42.6
-0.4
2.2
63.5
40.9

Associated Gene:

Gene:
FRRS1L
Ensembl Gene ID:
ENSAPLG00000009915
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010321
89308734 - 89315223
6490