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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8931501_8943950_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8931501 - 8943950
Intron Length:
12450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTGCTTTTAATT
Flanking Amino Acid:
YYFLGRMLGKALYENMLVEL
Intron Amino Acid Position:
829

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
64.7
0.54
1.2
73.32
38.1

Associated Gene:

Gene:
UBE3C
Ensembl Gene ID:
ENSAPLG00000005692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006021
8884858 - 8958906
74049