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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89368442_89381608_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
89368442 - 89381608
Intron Length:
13167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTTGC
5'SS Class:
major
3'SS Sequence:
TTGTTATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTGTTGTTATTT
Flanking Amino Acid:
KTSSLQDPNVRSPAPVRPET
Intron Amino Acid Position:
634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
65.8
41.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.2
0.75
0.8
82.1
34.6
Minor 5ss
42
-0.9
2.5
53.4
43.7
Minor BPS
49.9
0.07
2.2
74.68
43.1

Associated Gene:

Gene:
EPB41L4B
Ensembl Gene ID:
ENSAPLG00000011064
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026693
89338999 - 89500924
161926
ENSAPLT00000011539
89338999 - 89500924
161926