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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89389212_89392693_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
89389212 - 89392693
Intron Length:
3482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTGT
5'SS Class:
major
3'SS Sequence:
GCCGTTCTGCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTGGTGAAGA
Flanking Amino Acid:
VEAAFRVGTQLENQTTACMG
Intron Amino Acid Position:
612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
71.6
40.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
60.7
0.24
1
53.8
41.5
Minor 5ss
45.6
-0.5
2.9
65.6
45.5
Minor BPS
42.9
-0.5
2.6
62.28
43.9

Associated Gene:

Gene:
EPB41L4B
Ensembl Gene ID:
ENSAPLG00000011064
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026693
89338999 - 89500924
161926