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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89400223_89404432_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
89400223 - 89404432
Intron Length:
4210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
GGCATCTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGGCAT
U12 Branch Point Sequence:
TTTCGGGCATCT
Flanking Amino Acid:
DIVSGVPNPNKLSSGLPLLF
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
73.5
37.2
Major BPS
43
-0.4
1.5
46.5
47
Major PPT
69.5
0.44
0.9
65.7
40.9
Minor 5ss
39.7
-1.2
3
51.9
39.9
Minor BPS
33.3
-1.1
2.8
61.24
48.2

Associated Gene:

Gene:
EPB41L4B
Ensembl Gene ID:
ENSAPLG00000011064
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011539
89338999 - 89500924
161926
ENSAPLT00000026693
89338999 - 89500924
161926