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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89404615_89420554_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
89404615 - 89420554
Intron Length:
15940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTGAACTGAATT
Flanking Amino Acid:
HWHPHTPVNVSYPLNNSDLH
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.9
38.6
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
82.7
0.74
0.8
78
35.5
Minor 5ss
38.7
-1.3
2.8
47.8
47.9
Minor BPS
56.7
0.29
1.7
74.93
41.6

Associated Gene:

Gene:
EPB41L4B
Ensembl Gene ID:
ENSAPLG00000011064
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026693
89338999 - 89500924
161926
ENSAPLT00000011539
89338999 - 89500924
161926