Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89418039_89420554_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

89418039 - 89420554

Intron Length:

2516

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCAAG

5'SS Class:

strong_major

3'SS Sequence:

GCAAATGGTACAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTCTCAC

U12 Branch Point Sequence:

TAACCAATAACT

Flanking Amino Acid:

HWHPHTPVNVRPPYHDDRPY

Intron Amino Acid Position:

384

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.6

0.93

0.9

77.9

38.6

Major BPS

72.7

0.56

30.1

Major PPT

54.1

0.09

1.1

45.3

Minor 5ss

38.7

-1.3

2.8

47.8

47.9

Minor BPS

53.5

0.19

1.9

74.79

40.5

Associated Gene:

Gene:

EPB41L4B

Ensembl Gene ID:

ENSAPLG00000011064

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043334

89417262 - 89500924

83663

ENSAPLT00000018345

89417891 - 89455349

37459