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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89421492_89422241_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
89421492 - 89422241
Intron Length:
750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCCCGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TCAGTCTTGATT
Flanking Amino Acid:
ANNPVKAAQLCAKNTPEVHN
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.6
30.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
77.1
0.61
0.7
73.4
24.8
Minor 5ss
33.1
-1.9
3.2
40.3
40.2
Minor BPS
60
0.4
1.4
70.47
41.3

Associated Gene:

Gene:
EPB41L4B
Ensembl Gene ID:
ENSAPLG00000011064
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018345
89417891 - 89455349
37459
ENSAPLT00000011539
89338999 - 89500924
161926
ENSAPLT00000043334
89417262 - 89500924
83663
ENSAPLT00000026693
89338999 - 89500924
161926