About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89422273_89423497_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
89422273 - 89423497
Intron Length:
1225

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGATTTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
GTTTGTTTGATT
Flanking Amino Acid:
YPSRRHSTFKANNPVKAAQL
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.1
1.16
0.7
91.7
21.4
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
75.7
0.58
1.1
79.5
37.9
Minor 5ss
25.9
-2.8
4.1
39.9
46.1
Minor BPS
61.4
0.44
1.8
79.17
37.6

Associated Gene:

Gene:
EPB41L4B
Ensembl Gene ID:
ENSAPLG00000011064
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043334
89417262 - 89500924
83663
ENSAPLT00000026693
89338999 - 89500924
161926
ENSAPLT00000018345
89417891 - 89455349
37459
ENSAPLT00000011539
89338999 - 89500924
161926