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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89423874_89424045_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
89423874 - 89424045
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAA
U12 Branch Point Sequence:
TGTTTCTGCATT
Flanking Amino Acid:
TLVVVEDDEQGREQEHTFVF
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
84.7
26.5
Major BPS
62.7
0.32
1.2
71
33.2
Major PPT
76
0.59
0.9
74.6
35.4
Minor 5ss
44.1
-0.6
2.9
61.1
43.8
Minor BPS
54.6
0.22
1.9
77.06
39.7

Associated Gene:

Gene:
EPB41L4B
Ensembl Gene ID:
ENSAPLG00000011064
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011539
89338999 - 89500924
161926
ENSAPLT00000043334
89417262 - 89500924
83663
ENSAPLT00000026693
89338999 - 89500924
161926
ENSAPLT00000018345
89417891 - 89455349
37459