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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89424534_89425562_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
89424534 - 89425562
Intron Length:
1029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGATTATTGATT
Flanking Amino Acid:
MYGVDMHVVKGRDGCEYALG
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
75.2
0.57
0.9
69.5
36.8
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
57.2
0.31
1.6
73.22
37.5

Associated Gene:

Gene:
EPB41L4B
Ensembl Gene ID:
ENSAPLG00000011064
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011539
89338999 - 89500924
161926
ENSAPLT00000043334
89417262 - 89500924
83663
ENSAPLT00000026693
89338999 - 89500924
161926
ENSAPLT00000018345
89417891 - 89455349
37459